Registry HUPO-PSI cross-linking and derivatization reagents controlled vocabulary

A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.

Prefix: xlmod
Preferred Prefix: XLMOD
Keywords: obo ontology
Version: 2019-10-28
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Lutz Fischer 0000-0003-4978-0864 lutzfischer
Pattern for Local Unique Identifiers: Local identifiers in HUPO-PSI cross-linking and derivatization reagents controlled vocabulary should match this regular expression:
^\d{5}$
Example Local Unique Identifier: 00050 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from HUPO-PSI cross-linking and derivatization reagents controlled vocabulary should match this regular expression:
^xlmod:\d{5}$
Example CURIE: xlmod:00050

Metaregistry HUPO-PSI cross-linking and derivatization reagents controlled vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for xlmod with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`XLMOD`
BioPortal	`bioportal`	`XLMOD`
OBO Foundry	`obofoundry`	`xlmod`
OLS	`ols`	`xlmod`
OntoBee	`ontobee`	`XLMOD`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE xlmod:00050 is used to demonstrate the provides available for xlmod. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/xlmod:00050
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/XLMOD_00050
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_00050
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/XLMOD/?p=classes&conceptid=http://purl.obolibrary.org/obo/XLMOD_00050

Get the version:

>>> import bioregistry as br
>>> br.get_version("xlmod")
'2019-10-28'

Get the license:

>>> import bioregistry as br
>>> br.get_license("xlmod")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("xlmod")
'http://www.psidev.info/groups/controlled-vocabularies'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("xlmod")
'https://github.com/HUPO-PSI/xlmod-CV'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("xlmod")
'https://raw.githubusercontent.com/HUPO-PSI/mzIdentML/master/cv/XLMOD.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("xlmod")
'http://purl.obolibrary.org/obo/xlmod.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("xlmod")
'Lutz Fischer'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("xlmod")
'lutz.fischer@tu-berlin.de'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("xlmod")
'lutzfischer'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("xlmod")
'0000-0003-4978-0864'