Registry HUPO-PSI cross-linking and derivatization reagents controlled vocabulary

A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.

Prefix
xlmod
Preferred Prefix
XLMOD
Keywords
obo ontology
Version
2019-10-28
License
CC-BY-3.0
Links
Homepage Repository OBO OWL
Contact
Lutz Fischer   0000-0003-4978-0864   lutzfischer
Pattern for Local Unique Identifiers

Local identifiers in HUPO-PSI cross-linking and derivatization reagents controlled vocabulary should match this regular expression:
^\d{5}$

Example Local Unique Identifier
00050   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from HUPO-PSI cross-linking and derivatization reagents controlled vocabulary should match this regular expression:
^xlmod:\d{5}$

Example CURIE
xlmod:00050
Metaregistry HUPO-PSI cross-linking and derivatization reagents controlled vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for xlmod with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl XLMOD
BioPortal BioPortal Prefixes logo bioportal XLMOD
OBO Foundry OBO Foundry logo obofoundry xlmod
OLS Ontology Lookup Service logo ols xlmod
OntoBee OntoBee logo ontobee XLMOD
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE xlmod:00050 is used to demonstrate the provides available for xlmod. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Bioregistry bioregistry https://bioregistry.io/xlmod:00050
OBO Foundry obofoundry http://purl.obolibrary.org/obo/XLMOD_00050
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_00050
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/XLMOD/?p=classes&conceptid=http://purl.obolibrary.org/obo/XLMOD_00050