Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.
xenbase
Local identifiers in Xenbase should match this
regular expression:
^XB\-\w+\-\d+$
Compact URIs (CURIEs) constructed from Xenbase should match
this regular expression:
^xenbase:XB\-\w+\-\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
11 mappings to external registries for xenbase
with
5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
Xenbase
|
|
Biolink
|
biolink |
Xenbase
|
|
EDAM
|
edam |
2738
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.jrv6wj
|
|
GO
![]() |
go |
Xenbase
|
|
Identifiers.org
![]() |
miriam |
xenbase
|
|
N2T
![]() |
n2t |
xenbase
|
|
NCBI
|
ncbi |
Xenbase
|
|
Prefix Commons
|
prefixcommons |
xenbase
|
|
re3data
![]() |
re3data |
r3d100011331
|
|
UniProt
|
uniprot |
DB-0129
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
xenbase:XB-GENE-922462
is used to demonstrate the provides available for
xenbase
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Xenbase | xenbase |
https://www.xenbase.org/entry/XB-GENE-922462 |
Bioregistry | bioregistry |
https://bioregistry.io/xenbase:XB-GENE-922462 |
Identifiers.org | miriam |
https://identifiers.org/xenbase:XB-GENE-922462 |
Name-to-Thing | n2t |
https://n2t.net/xenbase:XB-GENE-922462 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/xenbase:XB-GENE-922462 |