Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.

Alternative Prefixes
anatomy cell biology developmental biology expression functional genomics genetics genome genomics proteomics
Homepage @Xenbase
Troy Pells   0000-0002-2340-5356   pellst
Pattern for Local Unique Identifiers

Local identifiers in Xenbase should match this regular expression:

Example Local Unique Identifier
XB-GENE-922462   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Xenbase should match this regular expression:

Example CURIE
Metaregistry Xenbase

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for xenbase with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext Xenbase
Biolink Biolink Model Registry logo biolink Xenbase
EDAM EDAM Ontology logo edam 2738
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.jrv6wj
GO Gene Ontology Registry logo go Xenbase
Identifiers.org Identifiers.org logo miriam xenbase
N2T Name-to-Thing logo n2t xenbase
NCBI National Center for Biotechnology Information Registry logo ncbi Xenbase
Prefix Commons Prefix Commons logo prefixcommons xenbase
re3data Registry of Research Data Repositories logo re3data r3d100011331
UniProt UniProt Cross-ref database logo uniprot DB-0129

Providers are various services that resolve CURIEs to URLs. The example CURIE xenbase:XB-GENE-922462 is used to demonstrate the provides available for xenbase. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Xenbase xenbase https://www.xenbase.org/entry/XB-GENE-922462
Bioregistry bioregistry https://bioregistry.io/xenbase:XB-GENE-922462
Identifiers.org miriam https://identifiers.org/xenbase:XB-GENE-922462
Name-to-Thing n2t https://n2t.net/xenbase:XB-GENE-922462
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/xenbase:XB-GENE-922462