Registry C. elegans phenotype

Ontology about C. elegans and other nematode phenotypes

Prefix: wbphenotype
Preferred Prefix: WBPhenotype
Alternative Prefixes: WBPhenotype
Keywords: anatomy life science obo ontology phenotype worm
Version: 2022-06-21
License: CC-BY-4.0
Links: Homepage Repository OBO OWL
Contact: Chris Grove 0000-0001-9076-6015 chris-grove
Pattern for Local Unique Identifiers: Local identifiers in C. elegans phenotype should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000983 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from C. elegans phenotype should match this regular expression:
^wbphenotype:\d{7}$
Example CURIE: wbphenotype:0000983
Publications: 2011 Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community.

Metaregistry C. elegans phenotype

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for wbphenotype with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`WBPHENOTYPE`
BioContext	`biocontext`	`WBPhenotype`
BioPortal	`bioportal`	`WB-PHENOTYPE`
FAIRSharing	`fairsharing`	`FAIRsharing.agvc7y`
GO	`go`	`WBPhenotype`
OBO Foundry	`obofoundry`	`wbphenotype`
OLS	`ols`	`wbphenotype`
OntoBee	`ontobee`	`WBPhenotype`
Prefix Commons	`prefixcommons`	`wbphenotype`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE wbphenotype:0000983 is used to demonstrate the provides available for wbphenotype. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
C. elegans phenotype	`wbphenotype`	http://purl.obolibrary.org/obo/WBPhenotype_0000983
Bioregistry	`bioregistry`	https://bioregistry.io/wbphenotype:0000983
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/WBPhenotype_0000983
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPhenotype_0000983
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE/?p=classes&conceptid=http://purl.obolibrary.org/obo/WBPhenotype_0000983

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/wbphenotype:0000983

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("WBPhenotype")
'wbphenotype'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("wbphenotype")
{'WBPhenotype'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("wbphenotype")
'2022-06-21'

Get the license:

>>> import bioregistry as br
>>> br.get_license("wbphenotype")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("wbphenotype")
'https://github.com/obophenotype/c-elegans-phenotype-ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("wbphenotype")
'https://github.com/obophenotype/c-elegans-phenotype-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("wbphenotype")
'http://purl.obolibrary.org/obo/wbphenotype.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("wbphenotype")
'http://purl.obolibrary.org/obo/wbphenotype.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("wbphenotype")
'Chris Grove'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("wbphenotype")
'cgrove@caltech.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("wbphenotype")
'chris-grove'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("wbphenotype")
'0000-0001-9076-6015'