Registry C. elegans development ontology

Ontology about the development and life stages of the C. elegans

Prefix: wbls
Preferred Prefix: WBls
Alternative Prefixes: WBls
Keywords: development developmental biology life science obo ontology worm
Version: 2022-06-21
License: CC-BY-4.0
Links: Homepage Repository OBO OWL
Contact: Chris Grove 0000-0001-9076-6015 chris-grove
Pattern for Local Unique Identifiers: Local identifiers in C. elegans development ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000690 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from C. elegans development ontology should match this regular expression:
^wbls:\d{7}$
Example CURIE: wbls:0000690
Publications: 2020 WormBase: a modern Model Organism Information Resource.

Metaregistry C. elegans development ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for wbls with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`WBLS`
BioContext	`biocontext`	`WBLS`
Biolink	`biolink`	`WBls`
BioPortal	`bioportal`	`WB-LS`
FAIRSharing	`fairsharing`	`FAIRsharing.sm90nh`
GO	`go`	`WBls`
OBO Foundry	`obofoundry`	`wbls`
OLS	`ols`	`wbls`
OntoBee	`ontobee`	`WBls`
Prefix Commons	`prefixcommons`	`wbls`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE wbls:0000690 is used to demonstrate the provides available for wbls. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
C. elegans development ontology	`wbls`	http://www.wormbase.org/get?name=0000690
Bioregistry	`bioregistry`	https://bioregistry.io/wbls:0000690
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/WBls_0000690
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBls_0000690
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/WB-LS/?p=classes&conceptid=http://purl.obolibrary.org/obo/WBls_0000690

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/wbls:0000690

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("WBls")
'wbls'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("wbls")
{'WBls'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("wbls")
'2022-06-21'

Get the license:

>>> import bioregistry as br
>>> br.get_license("wbls")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("wbls")
'https://github.com/obophenotype/c-elegans-development-ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("wbls")
'https://github.com/obophenotype/c-elegans-development-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("wbls")
'http://purl.obolibrary.org/obo/wbls.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("wbls")
'http://purl.obolibrary.org/obo/wbls.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("wbls")
'Chris Grove'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("wbls")
'cgrove@caltech.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("wbls")
'chris-grove'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("wbls")
'0000-0001-9076-6015'