The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.
- Prefix
umbbd.pathway- Alternative Prefixes
- UM-BBD_pathwayID
- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in EAWAG Biocatalysis/Biodegradation Database pathway should match this regular expression:
^\w+$ - Example Local Unique Identifier
- ala Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from EAWAG Biocatalysis/Biodegradation Database pathway should match this regular expression:
^umbbd\.pathway:\w+$ - Example CURIE
- umbbd.pathway:ala
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
UMBBD.PATHWAY
|
|
GO
|
go |
UM-BBD_pathwayID
|
|
Identifiers.org
|
miriam |
umbbd.pathway
|
|
N2T
|
n2t |
umbbd.pathway
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ala is used to demonstrate the providers
available for EAWAG Biocatalysis/Biodegradation Database pathway. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| EAWAG Biocatalysis/Biodegradation Database pathway | umbbd.pathway |
http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=ala |
| Bioregistry | bioregistry |
https://bioregistry.io/umbbd.pathway:ala |
| Identifiers.org | miriam |
https://identifiers.org/umbbd.pathway:ala |
| Name-to-Thing | n2t |
https://n2t.net/umbbd.pathway:ala |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Pathway map diagram | eawag |
http://eawag-bbd.ethz.ch/ala/ala_map.html |