Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present.
- Comment
This resource doesn't exist on the web anymore
- Prefix
tred- Keywords
- dna regulation
- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- 21552 Resolve
- Example CURIE
- tred:21552
Contacts
- Contact
- Missing Contact
- Reviewer
-
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Pathguide
|
pathguide |
167
|
|
Prefix Commons
|
prefixcommons |
tred
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 21552 is used to demonstrate the providers
available for Transcriptional Regulatory Element Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Transcriptional Regulatory Element Database | tred |
http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=21552 |
| Bioregistry | bioregistry |
https://bioregistry.io/tred:21552 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/tred:21552 |