The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.

Prefix
trans
Preferred Prefix
TRANS
Keywords
health science obo ontology pathogen
Version
2022-10-10
License
CC0-1.0
Links
Homepage Repository OBO OWL
Contact
Lynn Schriml   0000-0001-8910-9851   lschriml
Pattern for Local Unique Identifiers

Local identifiers in Pathogen Transmission Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000024   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pathogen Transmission Ontology should match this regular expression:
^TRANS:\d{7}$

Example CURIE
TRANS:0000024
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
ASKEM Epidemiology Prefixes
Metaregistry Pathogen Transmission Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl TRANS
BioContext biocontext TRANS
BioPortal BioPortal Prefixes logo bioportal TRANS
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.nygmp7
OBO Foundry OBO Foundry logo obofoundry trans
OLS Ontology Lookup Service logo ols trans
OntoBee OntoBee logo ontobee TRANS
Prefix Commons Prefix Commons logo prefixcommons pt
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/TRANS_$1

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE TRANS:0000024 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Pathogen Transmission Ontology trans http://purl.obolibrary.org/obo/TRANS_0000024
Pathogen Transmission Ontology (RDF) rdf http://purl.obolibrary.org/obo/TRANS_0000024
Bioregistry bioregistry https://bioregistry.io/trans:0000024
OBO Foundry obofoundry http://purl.obolibrary.org/obo/TRANS_0000024
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_0000024
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/TRANS/?p=classes&conceptid=http://purl.obolibrary.org/obo/TRANS_0000024
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pt:0000024