Registry Pathogen Transmission Ontology

The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.

Prefix
trans
Preferred Prefix
TRANS
Version
2020-08-04
License
CC0 1.0
Links
Homepage Repository OBO OWL
Contact
Lynn Schriml   0000-0001-8910-9851   lschriml
Pattern for Local Unique Identifiers

Local identifiers in Pathogen Transmission Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000024   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pathogen Transmission Ontology should match this regular expression:
^trans:\d{7}$

Example CURIE
trans:0000024
Publications
Metaregistry Pathogen Transmission Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for trans with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl TRANS
BioContext biocontext TRANS
BioPortal Prefixes bioportal TRANS
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.nygmp7
OBO Foundry OBO Foundry logo obofoundry trans
Ontology Lookup Service Ontology Lookup Service logo ols trans
OntoBee ontobee TRANS
Prefix Commons prefixcommons pt
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE trans:0000024 is used to demonstrate the provides available for trans. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Pathogen Transmission Ontology trans http://purl.obolibrary.org/obo/TRANS_0000024
Bioregistry bioregistry https://bioregistry.io/trans:0000024
OBO Foundry obofoundry http://purl.obolibrary.org/obo/TRANS_0000024
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_0000024
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/TRANS/?p=classes&conceptid=http://purl.obolibrary.org/obo/TRANS_0000024