Registry TarBase
TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.
- Prefix
tarbase- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in TarBase should match this regular expression:
^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)$ - Example Local Unique Identifier
- hsa-let-7a-2-3p Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from TarBase should match this regular expression:
^tarbase:[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)$ - Example CURIE
- tarbase:hsa-let-7a-2-3p
Metaregistry TarBase
The metaregistry provides mappings between the Bioregistry and other registries. There are
4 mappings to external registries for tarbase.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
TARBASE
|
FAIRSharing
|
fairsharing |
FAIRsharing.a0k4cd
|
Identifiers.org
|
miriam |
tarbase
|
Name-to-Thing
|
n2t |
tarbase
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
tarbase:
is used to demonstrate the provides available for
tarbase. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.