ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in SEED Reactions should match this regular expression:

Example Local Unique Identifier
rxn00001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from SEED Reactions should match this regular expression:

Example CURIE
Metaregistry SEED Reactions

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for seed.reaction with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Biolink Model Registry biolink SEED.REACTION logo miriam seed.reaction
Name-to-Thing Name-to-Thing logo n2t seed.reaction

Providers are various services that resolve CURIEs to URLs. The example CURIE seed.reaction:rxn00001 is used to demonstrate the provides available for seed.reaction. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
SEED Reactions seed.reaction
Bioregistry bioregistry miriam
Name-to-Thing n2t