Registry SEED Reactions
ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.
- Prefix
seed.reaction- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in SEED Reactions should match this regular expression:
^rxn\d+$ - Example Local Unique Identifier
- rxn00001 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from SEED Reactions should match this regular expression:
^seed\.reaction:rxn\d+$ - Example CURIE
- seed.reaction:rxn00001
Metaregistry SEED Reactions
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for seed.reaction.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| Biolink Model Registry | biolink |
SEED.REACTION
|
Identifiers.org
|
miriam |
seed.reaction
|
Name-to-Thing
|
n2t |
seed.reaction
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
seed.reaction:
is used to demonstrate the provides available for
seed.reaction. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| SEED Reactions | seed.reaction |
http://modelseed.org/biochem/reactions/rxn00001 |
| Bioregistry | bioregistry |
https://bioregistry.io/seed.reaction:rxn00001 |
| Identifiers.org | miriam |
https://identifiers.org/seed.reaction:rxn00001 |
| Name-to-Thing | n2t |
https://n2t.net/seed.reaction:rxn00001 |