ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.

Prefix
seed.reaction
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in SEED Reactions should match this regular expression:
^rxn\d+$

Example Local Unique Identifier
rxn00001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from SEED Reactions should match this regular expression:
^seed\.reaction:rxn\d+$

Example CURIE
seed.reaction:rxn00001
Metaregistry SEED Reactions

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for seed.reaction with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Biolink Model Registry biolink SEED.REACTION
Identifiers.org Identifiers.org logo miriam seed.reaction
Name-to-Thing Name-to-Thing logo n2t seed.reaction
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE seed.reaction:rxn00001 is used to demonstrate the provides available for seed.reaction. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
SEED Reactions seed.reaction http://modelseed.org/biochem/reactions/rxn00001
Bioregistry bioregistry https://bioregistry.io/seed.reaction:rxn00001
Identifiers.org miriam https://identifiers.org/seed.reaction:rxn00001
Name-to-Thing n2t https://n2t.net/seed.reaction:rxn00001