ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.
Local identifiers in SEED Reactions should match this
Compact URIs (CURIEs) constructed from SEED Reactions should match
this regular expression:
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for
1 unique external prefixes.
|Registry Name||Registry Metaprefix||External Prefix||Curate|
|Biolink Model Registry||
Providers are various services that resolve CURIEs to URLs. The example CURIE
is used to demonstrate the provides available for
seed.reaction. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.