This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.

Prefix
seed.compound
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in SEED Compound should match this regular expression:
^cpd\d+$

Example Local Unique Identifier
cpd15380   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from SEED Compound should match this regular expression:
^seed\.compound:cpd\d+$

Example CURIE
seed.compound:cpd15380
Metaregistry SEED Compound

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for seed.compound.

Registry Name Metaprefix External Prefix
BioContext biocontext SEED.COMPOUND
Identifiers.org Identifiers.org logo miriam seed.compound
Name-to-Thing Name-to-Thing logo n2t seed.compound
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE seed.compound: is used to demonstrate the provides available for seed.compound. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
SEED Compound seed.compound http://modelseed.org/biochem/compounds/cpd15380
Bioregistry bioregistry https://bioregistry.io/seed.compound:cpd15380
Identifiers.org miriam https://identifiers.org/seed.compound:cpd15380
Name-to-Thing n2t https://n2t.net/seed.compound:cpd15380