This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.

Prefix

seed

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in The SEED; should match this regular expression:
^\w+$

Example Local Unique Identifier

Biotin_biosynthesis   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from The SEED; should match this regular expression:
^seed:\w+$

Example CURIE

seed:Biotin_biosynthesis

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for seed.

Providers are various services that resolve CURIEs to URLs. The example CURIE seed: is used to demonstrate the provides available for seed. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.