This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in The SEED; should match this regular expression:

Example Local Unique Identifier
Biotin_biosynthesis   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from The SEED; should match this regular expression:

Example CURIE
Metaregistry The SEED;

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for seed with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext SEED
Gene Ontology Registry go SEED logo miriam seed
Name-to-Thing Name-to-Thing logo n2t seed
National Center for Biotechnology Information Registry ncbi SEED

Providers are various services that resolve CURIEs to URLs. The example CURIE seed:Biotin_biosynthesis is used to demonstrate the provides available for seed. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
The SEED; seed
Bioregistry bioregistry miriam
Name-to-Thing n2t