ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.
- Prefix
scretf- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in ScerTF should match this regular expression:
^\w+$ - Example Local Unique Identifier
- RSC3 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from ScerTF should match this regular expression:
^scretf:\w+$ - Example CURIE
- scretf:RSC3
Metaregistry ScerTF
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
SCRETF
|
|
Identifiers.org
|
miriam |
scretf
|
|
N2T
|
n2t |
scretf
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
scretf:RSC3
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| ScerTF | scretf |
http://stormo.wustl.edu/ScerTF/details/RSC3 |
| Bioregistry | bioregistry |
https://bioregistry.io/scretf:RSC3 |
| Identifiers.org | miriam |
https://identifiers.org/scretf:RSC3 |
| Name-to-Thing | n2t |
https://n2t.net/scretf:RSC3 |