ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ScerTF should match this regular expression:

Example Local Unique Identifier
RSC3   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ScerTF should match this regular expression:

Example CURIE
Metaregistry ScerTF

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for scretf with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext SCRETF logo miriam scretf
Name-to-Thing Name-to-Thing logo n2t scretf

Providers are various services that resolve CURIEs to URLs. The example CURIE scretf:RSC3 is used to demonstrate the provides available for scretf. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ScerTF scretf
Bioregistry bioregistry miriam
Name-to-Thing n2t