Registry Rat Strain Ontology

Ontology of rat strains

Prefix

rs

Preferred Prefix

RS

Keywords

life science obo ontology

Version

2019-12-13

License

CC-BY-4.0

Links

Homepage Repository OBO OWL @ratgenome

Contact

Shur-Jen Wang 0000-0001-5256-8683 shurjenw

Pattern for Local Unique Identifiers

Local identifiers in Rat Strain Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0001807 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Rat Strain Ontology should match this regular expression:
^rs:\d{7}$

Example CURIE

rs:0001807

Publications

Metaregistry Rat Strain Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for rs with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`RS`
BioContext	`biocontext`	`RS`
BioPortal	`bioportal`	`RS`
FAIRSharing	`fairsharing`	`FAIRsharing.vajn3f`
OBO Foundry	`obofoundry`	`rs`
OLS	`ols`	`rs`
OntoBee	`ontobee`	`RS`
Prefix Commons	`prefixcommons`	`rs`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE rs:0001807 is used to demonstrate the provides available for rs. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Rat Strain Ontology	`rs`	http://purl.obolibrary.org/obo/RS_0001807
Bioregistry	`bioregistry`	https://bioregistry.io/rs:0001807
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/RS_0001807
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_0001807
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/RS/?p=classes&conceptid=http://purl.obolibrary.org/obo/RS_0001807

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/rs:0001807

Get the version:

>>> import bioregistry as br
>>> br.get_version("rs")
'2019-12-13'

Get the license:

>>> import bioregistry as br
>>> br.get_license("rs")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("rs")
'http://rgd.mcw.edu/rgdweb/search/strains.html'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("rs")
'https://github.com/rat-genome-database/RS-Rat-Strain-Ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("rs")
'https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("rs")
'https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("rs")
'Shur-Jen Wang'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("rs")
'sjwang@mcw.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("rs")
'shurjenw'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("rs")
'0000-0001-5256-8683'