Registry RNACentral

RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.

Prefix

rnacentral

Alternative Prefixes

LNCRNADB

Keywords

bioinformatics biology

Links

Homepage Repository @RNAcentral

Contact

Blake A Sweeney 0000-0002-6497-2883 blakesweeney

Pattern for Local Unique Identifiers

Local identifiers in RNACentral should match this regular expression:
^URS[0-9A-F]{10}(\_\d+)?$

Example Local Unique Identifier

URS0000759CF4 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from RNACentral should match this regular expression:
^rnacentral:URS[0-9A-F]{10}(\_\d+)?$

Example CURIE

rnacentral:URS0000759CF4

Publications

Metaregistry RNACentral

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for rnacentral with 4 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`RNACENTRAL`
EDAM	`edam`	`3856`
FAIRSharing	`fairsharing`	`FAIRsharing.KcCjL7`
GO	`go`	`RNAcentral`
Identifiers.org	`miriam`	`rnacentral`
N2T	`n2t`	`rnacentral`
NCBI	`ncbi`	`RNAcentral`
Wikidata	`wikidata`	`P8697`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE rnacentral:URS0000759CF4 is used to demonstrate the provides available for rnacentral. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
RNACentral	`rnacentral`	https://rnacentral.org/rna/URS0000759CF4
Bioregistry	`bioregistry`	https://bioregistry.io/rnacentral:URS0000759CF4
Identifiers.org	`miriam`	https://identifiers.org/rnacentral:URS0000759CF4
Name-to-Thing	`n2t`	https://n2t.net/rnacentral:URS0000759CF4

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("LNCRNADB")
'rnacentral'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("rnacentral")
{'LNCRNADB'}

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("rnacentral")
'https://rnacentral.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("rnacentral")
'https://github.com/RNAcentral/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("rnacentral")
'Blake A Sweeney'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("rnacentral")
'bsweeney@ebi.ac.uk'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("rnacentral")
'blakesweeney'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("rnacentral")
'0000-0002-6497-2883'