RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
- Prefix
ricenetdb.protein- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in RiceNetDB Protein should match this regular expression:
^LOC\_Os\d{1,2}g\d{5}$ - Example Local Unique Identifier
- LOC_Os01g49190 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from RiceNetDB Protein should match this regular expression:
^ricenetdb\.protein:LOC\_Os\d{1,2}g\d{5}$ - Example CURIE
- ricenetdb.protein:LOC_Os01g49190
Metaregistry RiceNetDB Protein
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
RICENETDB.PROTEIN
|
|
Identifiers.org
|
miriam |
ricenetdb.protein
|
|
N2T
|
n2t |
ricenetdb.protein
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ricenetdb.protein:LOC_Os01g49190
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.