Registry Rice Genome Annotation Project

The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.

Prefix
ricegap
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Rice Genome Annotation Project should match this regular expression:
^LOC\_Os\d{1,2}g\d{5}$

Example Local Unique Identifier
LOC_Os02g13300   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Rice Genome Annotation Project should match this regular expression:
^ricegap:LOC\_Os\d{1,2}g\d{5}$

Example CURIE
ricegap:LOC_Os02g13300
Metaregistry Rice Genome Annotation Project

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for ricegap with 1 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext RICEGAP
Identifiers.org Identifiers.org logo miriam ricegap
Name-to-Thing Name-to-Thing logo n2t ricegap
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ricegap: is used to demonstrate the provides available for ricegap. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Rice Genome Annotation Project ricegap http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=LOC_Os02g13300
Bioregistry bioregistry https://bioregistry.io/ricegap:LOC_Os02g13300
Identifiers.org miriam https://identifiers.org/ricegap:LOC_Os02g13300
Name-to-Thing n2t https://n2t.net/ricegap:LOC_Os02g13300