Registry Plant Stress Ontology

The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.

Prefix: pso
Preferred Prefix: PSO
Keywords: medical informatics obo occupational medicine ontology
Version: 2020-05-19
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Laurel Cooper 0000-0002-6379-8932 cooperl09
Pattern for Local Unique Identifiers: Local identifiers in Plant Stress Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000013 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Plant Stress Ontology should match this regular expression:
^pso:\d{7}$
Example CURIE: pso:0000013
Publications: 2018 The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Ontology

Depends On (1) (bioregistry.schema:0000017 ): RO

Metaregistry Plant Stress Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for pso with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`PSO`
BioPortal	`bioportal`	`PSO`
FAIRSharing	`fairsharing`	`FAIRsharing.dyj433`
OBO Foundry	`obofoundry`	`pso`
OLS	`ols`	`pso`
OntoBee	`ontobee`	`PSO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pso:0000013 is used to demonstrate the provides available for pso. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/pso:0000013
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/PSO_0000013
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_0000013
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PSO/?p=classes&conceptid=http://purl.obolibrary.org/obo/PSO_0000013

Get the version:

>>> import bioregistry as br
>>> br.get_version("pso")
'2020-05-19'

Get the license:

>>> import bioregistry as br
>>> br.get_license("pso")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("pso")
'https://github.com/Planteome/plant-stress-ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("pso")
'https://github.com/Planteome/plant-stress-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("pso")
'http://purl.obolibrary.org/obo/pso.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("pso")
'http://purl.obolibrary.org/obo/pso.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("pso")
'Laurel Cooper'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("pso")
'cooperl@oregonstate.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("pso")
'cooperl09'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("pso")
'0000-0002-6379-8932'