ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.
The fact that this has .peptide as a subspace is a bit of a misnomer. Its original registration with MIRIAM uses a subview over the protein to point to peptides, but the identifiers in this semantic space seem to be about proteins.
Local identifiers in ProteomicsDB Peptide should match this
Compact URIs (CURIEs) constructed from ProteomicsDB Peptide should match
this regular expression:
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for
1 unique external prefixes.
|Registry Name||Registry Metaprefix||External Prefix||Curate|
Providers are various services that resolve CURIEs to URLs. The example CURIE
is used to demonstrate the provides available for
proteomicsdb.peptide. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.