Registry Precision Fermentation Ontology

Suggest

An ontology for PREcision FERmentation.

Prefix: prefer
Preferred Prefix: PREFER
Keywords: obo ontology
License: CC-BY-4.0
Links: Homepage Repository OBO OWL OBO JSON

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: 0000020 Resolve
Example CURIE: PREFER:0000020
Pattern for RDF URIs: http://purl.obolibrary.org/obo/PREFER_$1
Example RDF URI: http://purl.obolibrary.org/obo/PREFER_0000020

Contacts

Contact: Txell Amigó 0009-0009-0018-4253 txellext

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`PREFER`
BioPortal	`bioportal`	`PREFER`
OBO Foundry	`obofoundry`	`prefer`
OLS	`ols`	`prefer`
OntoBee	`ontobee`	`PREFER`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000020 is used to demonstrate the providers available for Precision Fermentation Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Precision Fermentation Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/PREFER_0000020
Bioregistry	`bioregistry`	https://bioregistry.io/prefer:0000020
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/PREFER_0000020
EBI Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/prefer/terms?iri=http://purl.obolibrary.org/obo/PREFER_0000020
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PREFER/?p=classes&conceptid=http://purl.obolibrary.org/obo/PREFER_0000020

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("prefer")
'Precision Fermentation Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("prefer")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("prefer")
'https://github.com/Multiomics-Analytics-Group/prefer_ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("prefer")
'https://github.com/Multiomics-Analytics-Group/prefer_ontology/'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("prefer")
'http://purl.obolibrary.org/obo/prefer.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("prefer")
'http://purl.obolibrary.org/obo/prefer.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("prefer")
'http://purl.obolibrary.org/obo/prefer.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("prefer")
'Txell Amigó'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("prefer")
'txellmgsol@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("prefer")
'txellext'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("prefer")
'0009-0009-0018-4253'