The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt "neoplasm" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.

Prefix
pgx
Alternative Prefixes
Progenetix
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Progenetix should match this regular expression:
^\w{3,15}[-_]\w[\w.-]{3,128}$

Example Local Unique Identifier
pgxbs-kftva5zv   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Progenetix should match this regular expression:
^pgx:\w{3,15}[-_]\w[\w.-]{3,128}$

Example CURIE
pgx:pgxbs-kftva5zv
Metaregistry Progenetix

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for pgx with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PGX
Cellosaurus Registry cellosaurus Progenetix
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.65tdnz
Identifiers.org Identifiers.org logo miriam pgx
Name-to-Thing Name-to-Thing logo n2t pgx
Registry of Research Data Repositories re3data r3d100012820
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pgx:pgxbs-kftva5zv is used to demonstrate the provides available for pgx. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Progenetix pgx https://progenetix.org/services/ids/pgxbs-kftva5zv
Bioregistry bioregistry https://bioregistry.io/pgx:pgxbs-kftva5zv
Identifiers.org miriam https://identifiers.org/pgx:pgxbs-kftva5zv
Name-to-Thing n2t https://n2t.net/pgx:pgxbs-kftva5zv