The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt "neoplasm" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.

Alternative Prefixes
biomedical science genomics
Michael Baudis   0000-0002-9903-4248   mbaudis
Pattern for Local Unique Identifiers

Local identifiers in Progenetix should match this regular expression:

Example Local Unique Identifier
pgxbs-kftva5zv   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Progenetix should match this regular expression:

Example CURIE
Metaregistry Progenetix

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PGX
Cellosaurus Cellosaurus Registry logo cellosaurus Progenetix
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.65tdnz logo miriam pgx
N2T Name-to-Thing logo n2t pgx
re3data Registry of Research Data Repositories logo re3data r3d100012820

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier pgxbs-kftva5zv is used to demonstrate the providers available for Progenetix. A guide for curating additional providers can be found here.

Name Metaprefix URI
Progenetix pgx
Bioregistry bioregistry miriam
Name-to-Thing n2t