The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt "neoplasm" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.

Prefix
pgx
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Progenetix should match this regular expression:
^\w{3,15}[-_]\w[\w.-]{3,128}$

Example Local Unique Identifier
pgxbs-kftva5zv   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Progenetix should match this regular expression:
^pgx:\w{3,15}[-_]\w[\w.-]{3,128}$

Example CURIE
pgx:pgxbs-kftva5zv
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for pgx.

Registry Name Metaprefix External Prefix
Identifiers.org miriam pgx
Name-to-Thing n2t pgx
Prefix Commons prefixcommons PGX
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE pgx:pgxbs-kftva5zv is used to demonstrate the provides available for pgx. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Progenetix pgx https://progenetix.org/services/ids/pgxbs-kftva5zv
Bioregistry bioregistry https://bioregistry.io/pgx:pgxbs-kftva5zv
Identifiers.org miriam https://identifiers.org/pgx:pgxbs-kftva5zv
Name-to-Thing n2t https://n2t.net/pgx:pgxbs-kftva5zv