Bioregistry - Plant Experimental Conditions Ontology

Registry Plant Experimental Conditions Ontology

A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.

Prefix

peco

Preferred Prefix

PECO

Version

2020-08-21

Links

Homepage Repository OBO OWL

Contact

Pankaj Jaiswal 0000-0002-1005-8383 jaiswalp

Pattern for Local Unique Identifiers

Local identifiers in Plant Experimental Conditions Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0007114 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Experimental Conditions Ontology should match this regular expression:
^PECO:\d{7}$

Example CURIE

PECO:0007114

References

Publication The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Ontology

Appears In: AGRO MCO

Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for peco.

Registry Name	Metaprefix	External Prefix
BioPortal Prefixes	`bioportal`	`PECO`
FAIRSharing	`fairsharing`	`FAIRsharing.6yNXYK`
OBO Foundry	`obofoundry`	`PECO`
Ontology Lookup Service	`ols`	`peco`
OntoBee	`ontobee`	`PECO`
Prefix Commons	`prefixcommons`	`PECO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE peco:0007114 is used to demonstrate the provides available for peco. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Plant Experimental Conditions Ontology	`peco`	http://purl.obolibrary.org/obo/PECO_0007114
Bioregistry	`bioregistry`	https://bioregistry.io/peco:0007114
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/PECO_0007114
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_0007114
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PECO/?p=classes&conceptid=http://purl.obolibrary.org/obo/PECO_0007114

Get the version:

>>> import bioregistry as br
>>> br.get_version("peco")
'2020-08-21'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("peco")
'http://planteome.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("peco")
'https://github.com/Planteome/plant-experimental-conditions-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("peco")
'https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("peco")
'http://purl.obolibrary.org/obo/peco.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("peco")
'Pankaj Jaiswal'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("peco")
'jaiswalp@science.oregonstate.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("peco")
'jaiswalp''

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("peco")
'0000-0002-1005-8383'