Registry Plant Environment Ontology Deprecated

The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.

Preferred Prefix
Alternative Prefixes
Homepage OBO OWL
Pattern for Local Unique Identifiers

Local identifiers in Plant Environment Ontology should match this regular expression:

Example Local Unique Identifier
0007114   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Environment Ontology should match this regular expression:

Example CURIE
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is EO:. Therefore, you might see local unique identifiers written out as CURIEs.

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for peco.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal PECO miriam eo
Name-to-Thing n2t eo
OBO Foundry obofoundry EO
Ontology Lookup Service ols peco
OntoBee ontobee PECO
Prefix Commons prefixcommons PECO

Providers are various services that resolve CURIEs to URLs. The example CURIE peco:0007114 is used to demonstrate the provides available for peco. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Plant Environment Ontology peco
Bioregistry bioregistry miriam
OBO Foundry obofoundry
Ontology Lookup Service ols
Name-to-Thing n2t
BioPortal Prefixes bioportal