PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.

Prefix
paxdb.protein
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PaxDb Protein should match this regular expression:
^\d+$

Example Local Unique Identifier
977869   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PaxDb Protein should match this regular expression:
^paxdb.protein:\d+$

Example CURIE
paxdb.protein:977869
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for paxdb.protein.

Registry Name Metaprefix External Prefix
Identifiers.org miriam paxdb.protein
Name-to-Thing n2t paxdb.protein
Prefix Commons prefixcommons PAXDB.PROTEIN
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE paxdb.protein:977869 is used to demonstrate the provides available for paxdb.protein. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PaxDb Protein paxdb.protein http://pax-db.org/#!protein/977869
Bioregistry bioregistry https://bioregistry.io/paxdb.protein:977869
Identifiers.org miriam https://identifiers.org/paxdb.protein:977869
Name-to-Thing n2t https://n2t.net/paxdb.protein:977869