PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.

Prefix

paxdb.protein

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in PaxDb Protein should match this regular expression:
^\d+$

Example Local Unique Identifier

977869   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PaxDb Protein should match this regular expression:
^paxdb\.protein:\d+$

Example CURIE

paxdb.protein:977869

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for paxdb.protein.

Providers are various services that resolve CURIEs to URLs. The example CURIE paxdb.protein:977869 is used to demonstrate the provides available for paxdb.protein. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.