PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PaxDb Organism should match this regular expression:

Example Local Unique Identifier
9606   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PaxDb Organism should match this regular expression:

Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for paxdb.organism.

Registry Name Metaprefix External Prefix miriam paxdb.organism
Name-to-Thing n2t paxdb.organism
Prefix Commons prefixcommons PAXDB.ORGANISM

Providers are various services that resolve CURIEs to URLs. The example CURIE paxdb.organism:9606 is used to demonstrate the provides available for paxdb.organism. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PaxDb Organism paxdb.organism!species/9606
Bioregistry bioregistry miriam
Name-to-Thing n2t