PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.

Prefix
paxdb.organism
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PaxDb Organism should match this regular expression:
^\d+$

Example Local Unique Identifier
9606   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PaxDb Organism should match this regular expression:
^paxdb.organism:\d+$

Example CURIE
paxdb.organism:9606
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for paxdb.organism.

Registry Name Metaprefix External Prefix
Identifiers.org miriam paxdb.organism
Name-to-Thing n2t paxdb.organism
Prefix Commons prefixcommons PAXDB.ORGANISM
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE paxdb.organism:9606 is used to demonstrate the provides available for paxdb.organism. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PaxDb Organism paxdb.organism http://pax-db.org/#!species/9606
Bioregistry bioregistry https://bioregistry.io/paxdb.organism:9606
Identifiers.org miriam https://identifiers.org/paxdb.organism:9606
Name-to-Thing n2t https://n2t.net/paxdb.organism:9606