Registry Ontology of RNA Sequencing

An application ontology designed to annotate next-generation sequencing experiments performed on RNA.

Prefix: ornaseq
Preferred Prefix: ORNASEQ
Keywords: obo ontology
Version: 2019-07-08
License: CC-BY-4.0
Links: Homepage Repository OBO OWL
Contact: Stephen Fisher 0000-0001-8034-7685 safisher
Pattern for Local Unique Identifiers: Local identifiers in Ontology of RNA Sequencing should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000010 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Ontology of RNA Sequencing should match this regular expression:
^ornaseq:\d{7}$
Example CURIE: ornaseq:0000010

Metaregistry Ontology of RNA Sequencing

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for ornaseq with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ORNASEQ`
BioPortal	`bioportal`	`ORNASEQ`
OBO Foundry	`obofoundry`	`ornaseq`
OLS	`ols`	`ornaseq`
OntoBee	`ontobee`	`ORNASEQ`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ornaseq:0000010 is used to demonstrate the provides available for ornaseq. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/ornaseq:0000010
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ORNASEQ_0000010
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_0000010
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ORNASEQ/?p=classes&conceptid=http://purl.obolibrary.org/obo/ORNASEQ_0000010

Get the version:

>>> import bioregistry as br
>>> br.get_version("ornaseq")
'2019-07-08'

Get the license:

>>> import bioregistry as br
>>> br.get_license("ornaseq")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ornaseq")
'http://kim.bio.upenn.edu/software/ornaseq.shtml'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("ornaseq")
'https://github.com/safisher/ornaseq'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("ornaseq")
'http://purl.obolibrary.org/obo/ornaseq.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ornaseq")
'http://purl.obolibrary.org/obo/ornaseq.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ornaseq")
'Stephen Fisher'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ornaseq")
'safisher@upenn.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("ornaseq")
'safisher'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ornaseq")
'0000-0001-8034-7685'