Registry The Ontology of Genes and Genomes

OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets.

Preferred Prefix
Homepage OWL
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
3000887619   Resolve
Pattern for CURIES
Could not construct CURIE oattern
Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for ogg.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal OGG
OBO Foundry obofoundry OGG
Ontology Lookup Service ols ogg
OntoBee ontobee OGG
Prefix Commons prefixcommons OGG

Providers are various services that resolve CURIEs to URLs. The example CURIE ogg:3000887619 is used to demonstrate the provides available for ogg. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
The Ontology of Genes and Genomes ogg
Bioregistry bioregistry
OBO Foundry obofoundry
Ontology Lookup Service ols
BioPortal Prefixes bioportal