Registry The Ontology of Genes and Genomes

OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets.

Preferred Prefix
CC BY 3.0
Homepage Repository OWL
Yongqun Oliver He   0000-0001-9189-9661   yongqunh
Pattern for Local Unique Identifiers

Local identifiers in The Ontology of Genes and Genomes should match this regular expression:

Example Local Unique Identifier
3000887619   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from The Ontology of Genes and Genomes should match this regular expression:

Example CURIE
Metaregistry The Ontology of Genes and Genomes

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for ogg with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl OGG
BioContext biocontext OGG
BioPortal Prefixes bioportal OGG
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.zmx7nn
OBO Foundry OBO Foundry logo obofoundry ogg
Ontology Lookup Service Ontology Lookup Service logo ols ogg
OntoBee ontobee OGG

Providers are various services that resolve CURIEs to URLs. The example CURIE ogg:3000887619 is used to demonstrate the provides available for ogg. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
The Ontology of Genes and Genomes ogg
Bioregistry bioregistry
OBO Foundry obofoundry
Ontology Lookup Service ols
BioPortal Prefixes bioportal