Registry OBO Foundry ontology

Suggest

An ontology in the OBO foundry, not exactly the same as the obo namespace

Prefix: obofoundry
Keywords: registry
License: CC0-1.0
Links: Homepage Repository

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: chebi Resolve
Example CURIE: obofoundry:chebi
Format String for RDF URIs: https://www.obofoundry.org/ontology/$1
Example RDF URI: https://www.obofoundry.org/ontology/chebi

Contacts

Contact: Chris Mungall 0000-0002-6601-2165 cmungall
Contributor: creator Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier chebi is used to demonstrate the providers available for OBO Foundry ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
OBO Foundry ontology	`obofoundry`	https://www.obofoundry.org/ontology/chebi
OBO Foundry ontology (RDF)	`rdf`	https://www.obofoundry.org/ontology/chebi
Bioregistry	`bioregistry`	https://bioregistry.io/obofoundry:chebi

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0-1.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("obofoundry")
'OBO Foundry ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("obofoundry")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("obofoundry")
'https://obofoundry.org'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("obofoundry")
'https://github.com/OBOFoundry/OBOFoundry.github.io'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("obofoundry")
'Chris Mungall'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("obofoundry")
'cjmungall@lbl.gov'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("obofoundry")
'cmungall'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("obofoundry")
'0000-0002-6601-2165'