Registry Metabolomics Standards Initiative Ontology

an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.

Prefix: msio
Keywords: annotation data analysis dataplant experimental measurement functional magnetic resonance imaging life sciences, biology mass spectrum metabolomics nmr nuclear magnetic resonance spectroscopy omics ontology
Version: 1.0.1
License: CC-BY-3.0
Links: Homepage Repository OWL
Publications: 2007 Metabolomics standards initiative: ontology working group work in progress

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Metabolomics Standards Initiative Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000111 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Metabolomics Standards Initiative Ontology should match this regular expression:
^msio:\d{7}$
Example CURIE: msio:0000111

Contacts

Contact: Philippe Rocca-Serra 0000-0001-9853-5668

Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection (1): DataPLANT Collection

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
FAIRSharing	`fairsharing`	`FAIRsharing.4c7f91`
OLS	`ols`	`msio`
TIB-TS	`tib`	`msio`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000111 is used to demonstrate the providers available for Metabolomics Standards Initiative Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Metabolomics Standards Initiative Ontology	`msio`	http://purl.obolibrary.org/obo/MSIO_0000111
Bioregistry	`bioregistry`	https://bioregistry.io/msio:0000111

Get the version:

>>> import bioregistry as br
>>> br.get_version("msio")
'1.0.1'

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("msio")
'Metabolomics Standards Initiative Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("msio")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("msio")
'https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("msio")
'https://github.com/ISA-tools/MSIO'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("msio")
'https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("msio")
'Philippe Rocca-Serra'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("msio")
'philippe.rocca-serra@oerc.ox.ac.uk'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("msio")
'0000-0001-9853-5668'