A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes

Prefix
mpath
Preferred Prefix
MPATH
Alternative Prefixes
MPATH
Version
2020-05-19
License
CC BY 3.0
Links
Homepage Repository OBO OWL
Contact
Paul Schofield   0000-0002-5111-7263   PaulNSchofield
Pattern for Local Unique Identifiers

Local identifiers in Mouse pathology ontology should match this regular expression:
^\d+$

Example Local Unique Identifier
728   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Mouse pathology ontology should match this regular expression:
^mpath:\d+$

Example CURIE
mpath:728
Publications
2010 Pathbase and the MPATH ontology. Community resources for mouse histopathology.
Metaregistry Mouse pathology ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for mpath with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl MPATH
BioContext biocontext MPATH
BioPortal Prefixes bioportal MPATH
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3wbgm0
OBO Foundry OBO Foundry logo obofoundry mpath
Ontology Lookup Service Ontology Lookup Service logo ols mpath
OntoBee ontobee MPATH
Prefix Commons prefixcommons mpath
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE mpath:728 is used to demonstrate the provides available for mpath. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Mouse pathology ontology mpath http://purl.obolibrary.org/obo/MPATH_728
Bioregistry bioregistry https://bioregistry.io/mpath:728
OBO Foundry obofoundry http://purl.obolibrary.org/obo/MPATH_728
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_728
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/MPATH/?p=classes&conceptid=http://purl.obolibrary.org/obo/MPATH_728