The primary goal of this ontology is to standardize the representation of molecular simulation data, processes, and methodologies across disparate simulation platforms, engines (e.g., GROMACS, AMBER, NAMD), and analysis tools, while ensuring these terms are interoperable with existing life sciences ontologies
- Prefix
molsim- Preferred Prefix
MOLSIM- Keywords
- ontology
- License
- CC-BY-NC-SA-4.0
- Links
- Homepage Repository OBO OWL
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Molecular Simulation Ontology should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 000000 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Molecular Simulation Ontology should match this regular expression:
^MOLSIM:\d+$ - Example CURIE
- MOLSIM:000000
Contacts
- Contact
- Fathoni A. Musyaffa
- Contributors
-
submitter
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
MOLSIM
|
|
BioPortal
|
bioportal |
MOLSIM
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 000000 is used to demonstrate the providers
available for Molecular Simulation Ontology. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Molecular Simulation Ontology | molsim |
http://purl.obolibrary.org/obo/MOLSIM_000000 |
| Bioregistry | bioregistry |
https://bioregistry.io/molsim:000000 |