ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.

computational biology life science neurobiology
Homepage @SenseLabProject
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ModelDB should match this regular expression:

Example Local Unique Identifier
45539   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ModelDB should match this regular expression:

Example CURIE
Metaregistry ModelDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for modeldb with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MODELDB
EDAM Ontology edam 2669
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5rb3fk logo miriam modeldb
Name-to-Thing Name-to-Thing logo n2t modeldb
Prefix Commons prefixcommons modeldb
Registry of Research Data Repositories re3data r3d100011330

Providers are various services that resolve CURIEs to URLs. The example CURIE modeldb:45539 is used to demonstrate the provides available for modeldb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ModelDB modeldb
Bioregistry bioregistry miriam
Name-to-Thing n2t