ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.

Prefix
modeldb
Keywords
computational biology life science neurobiology
Links
Homepage @SenseLabProject
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in ModelDB should match this regular expression:
^\d+$

Example Local Unique Identifier
45539   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ModelDB should match this regular expression:
^modeldb:\d+$

Example CURIE
modeldb:45539
Publications
Metaregistry ModelDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for modeldb with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MODELDB
EDAM Ontology edam 2669
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5rb3fk
Identifiers.org Identifiers.org logo miriam modeldb
Name-to-Thing Name-to-Thing logo n2t modeldb
Prefix Commons prefixcommons modeldb
Registry of Research Data Repositories re3data r3d100011330
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE modeldb:45539 is used to demonstrate the provides available for modeldb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
ModelDB modeldb http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=45539
Bioregistry bioregistry https://bioregistry.io/modeldb:45539
Identifiers.org miriam https://identifiers.org/modeldb:45539
Name-to-Thing n2t https://n2t.net/modeldb:45539