MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

eukaryotic genome
Omar Harb   0000-0003-4446-6200   ramobrah
Pattern for Local Unique Identifiers

Local identifiers in MicrosporidiaDB should match this regular expression:

Example Local Unique Identifier
ECU03_0820i   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MicrosporidiaDB should match this regular expression:

Example CURIE
2009 EuPathDB: a portal to eukaryotic pathogen databases
Metaregistry MicrosporidiaDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MICROSPORIDIA
Identifiers.org Identifiers.org logo miriam microsporidia
N2T Name-to-Thing logo n2t microsporidia
Prefix Commons Prefix Commons logo prefixcommons microsporidia

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ECU03_0820i is used to demonstrate the providers available for MicrosporidiaDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
MicrosporidiaDB microsporidia http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=ECU03_0820i
Bioregistry bioregistry https://bioregistry.io/microsporidia:ECU03_0820i
Identifiers.org miriam https://identifiers.org/microsporidia:ECU03_0820i
Name-to-Thing n2t https://n2t.net/microsporidia:ECU03_0820i
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/microsporidia:ECU03_0820i