Registry Ontology of Prokaryotic Phenotypic and Metabolic Characters

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An ontology of prokaryotic phenotypic and metabolic characters

Prefix: micro
Preferred Prefix: MICRO
Keywords: assay bioinformatics cell culture microbiology obo ontology phenotype
Version: 1.5.1
License: CC BY 2.0
Links: Homepage Repository OWL
Contact: Carrine Blank 0000-0002-2100-6351 carrineblank
Pattern for Local Unique Identifiers: Local identifiers in Ontology of Prokaryotic Phenotypic and Metabolic Characters should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0002999 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Ontology of Prokaryotic Phenotypic and Metabolic Characters should match this regular expression:
^MICRO:\d{7}$
Example CURIE: MICRO:0002999
Publications: 2016 MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 ): MCO

Metaregistry Ontology of Prokaryotic Phenotypic and Metabolic Characters

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`MICRO`
BioContext	`biocontext`	`MICRO`
FAIRSharing	`fairsharing`	`FAIRsharing.brhpb0`
OBO Foundry	`obofoundry`	`micro`
OLS	`ols`	`micro`
OntoBee	`ontobee`	`MICRO`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/MICRO_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0002999 is used to demonstrate the providers available for Ontology of Prokaryotic Phenotypic and Metabolic Characters. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Ontology of Prokaryotic Phenotypic and Metabolic Characters (RDF)	`rdf`	http://purl.obolibrary.org/obo/MICRO_0002999
Bioregistry	`bioregistry`	https://bioregistry.io/micro:0002999
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/MICRO_0002999
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_0002999

Get the version:

>>> import bioregistry as br
>>> br.get_version("micro")
'1.5.1'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("micro")
'Ontology of Prokaryotic Phenotypic and Metabolic Characters'

Get the license:

>>> import bioregistry as br
>>> br.get_license("micro")
'CC BY 2.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("micro")
'https://github.com/carrineblank/MicrO'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("micro")
'https://github.com/carrineblank/MicrO'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("micro")
'http://purl.obolibrary.org/obo/micro.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("micro")
'Carrine Blank'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("micro")
'carrine.blank@umontana.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("micro")
'carrineblank'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("micro")
'0000-0002-2100-6351'