MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.

Prefix
metanetx.reaction
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in MetaNetX reaction should match this regular expression:
^(MNXR\d+|EMPTY)$

Example Local Unique Identifier
MNXR101574   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MetaNetX reaction should match this regular expression:
^metanetx\.reaction:(MNXR\d+|EMPTY)$

Example CURIE
metanetx.reaction:MNXR101574
Metaregistry MetaNetX reaction

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext METANETX.REACTION
Biolink Biolink Model Registry logo biolink METANETX.REACTION
Identifiers.org Identifiers.org logo miriam metanetx.reaction
N2T Name-to-Thing logo n2t metanetx.reaction
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE metanetx.reaction:MNXR101574 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
MetaNetX reaction metanetx.reaction https://www.metanetx.org/equa_info/MNXR101574
Bioregistry bioregistry https://bioregistry.io/metanetx.reaction:MNXR101574
Identifiers.org miriam https://identifiers.org/metanetx.reaction:MNXR101574
Name-to-Thing n2t https://n2t.net/metanetx.reaction:MNXR101574