MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.

Prefix
metanetx.compartment
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in MetaNetX compartment should match this regular expression:
^(MNX[CD]\d+|BOUNDARY|IN|OUT)$

Example Local Unique Identifier
MNXC15   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MetaNetX compartment should match this regular expression:
^metanetx.compartment:(MNX[CD]\d+|BOUNDARY|IN|OUT)$

Example CURIE
metanetx.compartment:MNXC15
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for metanetx.compartment.

Registry Name Metaprefix External Prefix
Identifiers.org miriam metanetx.compartment
Name-to-Thing n2t metanetx.compartment
Prefix Commons prefixcommons METANETX.COMPARTMENT
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE metanetx.compartment:MNXC15 is used to demonstrate the provides available for metanetx.compartment. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
MetaNetX compartment metanetx.compartment https://www.metanetx.org/comp_info/MNXC15
Bioregistry bioregistry https://bioregistry.io/metanetx.compartment:MNXC15
Identifiers.org miriam https://identifiers.org/metanetx.compartment:MNXC15
Name-to-Thing n2t https://n2t.net/metanetx.compartment:MNXC15