MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.
Local identifiers in MetaNetX compartment should match this
Compact URIs (CURIEs) constructed from MetaNetX compartment should match
this regular expression:
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for
1 unique external prefixes.
|Registry Name||Registry Metaprefix||External Prefix||Curate|
Providers are various services that resolve CURIEs to URLs. The example CURIE
is used to demonstrate the provides available for
metanetx.compartment. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.