MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in MetaNetX compartment should match this regular expression:

Example Local Unique Identifier
MNXC15   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MetaNetX compartment should match this regular expression:

Example CURIE
Metaregistry MetaNetX compartment

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext METANETX.COMPARTMENT logo miriam metanetx.compartment
N2T Name-to-Thing logo n2t metanetx.compartment

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MNXC15 is used to demonstrate the providers available for MetaNetX compartment. A guide for curating additional providers can be found here.

Name Metaprefix URI
MetaNetX compartment metanetx.compartment
Bioregistry bioregistry miriam
Name-to-Thing n2t