MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in MetaNetX compartment should match this regular expression:

Example Local Unique Identifier
MNXC15   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MetaNetX compartment should match this regular expression:

Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for metanetx.compartment.

Registry Name Metaprefix External Prefix miriam metanetx.compartment
Name-to-Thing n2t metanetx.compartment
Prefix Commons prefixcommons METANETX.COMPARTMENT

Providers are various services that resolve CURIEs to URLs. The example CURIE metanetx.compartment:MNXC15 is used to demonstrate the provides available for metanetx.compartment. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
MetaNetX compartment metanetx.compartment
Bioregistry bioregistry miriam
Name-to-Thing n2t