MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.
Local identifiers in MetaNetX compartment should match this
Compact URIs (CURIEs) constructed from MetaNetX compartment should match
this regular expression:
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for
|Registry Name||Metaprefix||External Prefix|
Providers are various services that resolve CURIEs to URLs. The example CURIE
metanetx.compartment:MNXC15 is used to demonstrate the provides available for
metanetx.compartment. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.