MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.

Prefix
matrixdb.association
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in MatrixDB Association should match this regular expression:
^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$

Example Local Unique Identifier
P00747__P07355   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MatrixDB Association should match this regular expression:
^matrixdb.association:([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$

Example CURIE
matrixdb.association:P00747__P07355
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for matrixdb.association.

Registry Name Metaprefix External Prefix
Identifiers.org miriam matrixdb.association
Name-to-Thing n2t matrixdb.association
Prefix Commons prefixcommons MATRIXDB.ASSOCIATION
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE matrixdb.association:P00747__P07355 is used to demonstrate the provides available for matrixdb.association. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
MatrixDB Association matrixdb.association http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=P00747__P07355&class=Association
Bioregistry bioregistry https://bioregistry.io/matrixdb.association:P00747__P07355
Identifiers.org miriam https://identifiers.org/matrixdb.association:P00747__P07355
Name-to-Thing n2t https://n2t.net/matrixdb.association:P00747__P07355