Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks.
- Comment
Closes #508
- Prefix
linkml- Preferred Prefix
linkml- Links
- Homepage Request Discussion
- Publications
- 2023 linkml/linkml-model: v1.5.2
Identifier Standards
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- SchemaDefinition Resolve
- Example CURIE
- linkml:SchemaDefinition
Contacts
- Contact
-
Chris Mungall
0000-0002-6601-2165
cmungall
- Contributors
-
submitter
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- GHGA Collection
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 1 mapping to an external registry.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Biolink
|
biolink |
linkml
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier SchemaDefinition is used to demonstrate the providers
available for LinkML. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| LinkML | linkml |
https://w3id.org/linkml/SchemaDefinition |
| Bioregistry | bioregistry |
https://bioregistry.io/linkml:SchemaDefinition |