The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in LINCS Data should match this regular expression:

Example Local Unique Identifier
LDS-1110   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from LINCS Data should match this regular expression:

Example CURIE
Metaregistry LINCS Data

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext LINCS.DATA logo miriam
N2T Name-to-Thing logo n2t

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier LDS-1110 is used to demonstrate the providers available for LINCS Data. A guide for curating additional providers can be found here.

Name Metaprefix URI
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
omicsdi Lincs through OmicsDI