The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).

Prefix
lincs.data
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in LINCS Data should match this regular expression:
^[EL]D[SG]-\d+$

Example Local Unique Identifier
LDS-1110   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from LINCS Data should match this regular expression:
^lincs.data:[EL]D[SG]-\d+$

Example CURIE
lincs.data:LDS-1110
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for lincs.data.

Registry Name Metaprefix External Prefix
Identifiers.org miriam lincs.data
Name-to-Thing n2t lincs.data
Prefix Commons prefixcommons LINCS.DATA
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE lincs.data:LDS-1110 is used to demonstrate the provides available for lincs.data. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
LINCS Data lincs.data http://lincsportal.ccs.miami.edu/datasets/#/view/LDS-1110
Bioregistry bioregistry https://bioregistry.io/lincs.data:LDS-1110
Identifiers.org miriam https://identifiers.org/lincs.data:LDS-1110
Name-to-Thing n2t https://n2t.net/lincs.data:LDS-1110
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
omicsdi Lincs through OmicsDI https://www.omicsdi.org/dataset/lincs/LDS-1110