The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).
lincs.data
Local identifiers in LINCS Data should match this
regular expression:
^[EL]D[SG]-\d+$
Compact URIs (CURIEs) constructed from LINCS Data should match
this regular expression:
^lincs\.data:[EL]D[SG]-\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
LINCS.DATA
|
|
Identifiers.org | miriam |
lincs.data
|
|
N2T | n2t |
lincs.data
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier LDS-1110
is used to demonstrate the providers
available for LINCS Data. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
LINCS Data | lincs.data |
http://lincsportal.ccs.miami.edu/datasets/#/view/LDS-1110 |
Bioregistry | bioregistry |
https://bioregistry.io/lincs.data:LDS-1110 |
Identifiers.org | miriam |
https://identifiers.org/lincs.data:LDS-1110 |
Name-to-Thing | n2t |
https://n2t.net/lincs.data:LDS-1110 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
omicsdi |
Lincs through OmicsDI | https://www.omicsdi.org/dataset/lincs/LDS-1110 |