Registry Integrative and Conjugative Element Ontology

A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.

Comment: ICEO is not consistent about its identfiers like ICEO:0000595:1 and ICEO:0000595_1
Prefix: iceo
Preferred Prefix: ICEO
Keywords: obo ontology
Version: 2.1
License: CC-BY-4.0
Links: Homepage Repository OWL
Contact: Meng LIU 0000-0003-3781-6962 Lemon-Liu
Pattern for Local Unique Identifiers: Local identifiers in Integrative and Conjugative Element Ontology should match this regular expression:
^\d{7}(_\d)?$
Example Local Unique Identifiers: 0000712_1 Resolve
0000712 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Integrative and Conjugative Element Ontology should match this regular expression:
^ICEO:\d{7}(_\d)?$
Example CURIEs: ICEO:0000712_1
ICEO:0000712
Publications: 2022 ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements

Metaregistry Integrative and Conjugative Element Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ICEO`
BioPortal	`bioportal`	`ICEO`
OBO Foundry	`obofoundry`	`iceo`
OLS	`ols`	`iceo`
OntoBee	`ontobee`	`ICEO`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/ICEO_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000712_1 is used to demonstrate the providers available for Integrative and Conjugative Element Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Integrative and Conjugative Element Ontology	`iceo`	http://purl.obolibrary.org/obo/ICEO_0000712_1
Integrative and Conjugative Element Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/ICEO_0000712_1
Bioregistry	`bioregistry`	https://bioregistry.io/iceo:0000712_1
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ICEO_0000712_1
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_0000712_1
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ICEO/?p=classes&conceptid=http://purl.obolibrary.org/obo/ICEO_0000712_1

Get the version:

>>> import bioregistry as br
>>> br.get_version("iceo")
'2.1'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("iceo")
'Integrative and Conjugative Element Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("iceo")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("iceo")
'https://github.com/ontoice/ICEO'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("iceo")
'https://github.com/ontoice/ICEO'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("iceo")
'http://purl.obolibrary.org/obo/iceo.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("iceo")
'Meng LIU'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("iceo")
'liumeng94@sjtu.edu.cn'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("iceo")
'Lemon-Liu'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("iceo")
'0000-0003-3781-6962'