The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.

microbial taxonomy
Tsute Chen   0000-0001-6689-317X   tsute
Pattern for Local Unique Identifiers

Local identifiers in Human Oral Microbiome Database should match this regular expression:

Example Local Unique Identifier
811   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Human Oral Microbiome Database should match this regular expression:

Example CURIE
2010 The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
Metaregistry Human Oral Microbiome Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOMD.TAXON logo miriam homd.taxon
N2T Name-to-Thing logo n2t homd.taxon
NCBI National Center for Biotechnology Information Registry logo ncbi HOMD
Prefix Commons Prefix Commons logo prefixcommons homd.taxon

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 811 is used to demonstrate the providers available for Human Oral Microbiome Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Human Oral Microbiome Database homd.taxon
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF