The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.

Prefix

homd.seq

Keywords

genome microbial

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in HOMD Sequence Metainformation should match this regular expression:
^SEQF\d+$

Example Local Unique Identifier

SEQF1003   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from HOMD Sequence Metainformation should match this regular expression:
^homd\.seq:SEQF\d+$

Example CURIE

homd.seq:SEQF1003

Publications

2010 The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information.

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for homd.seq with 1 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE homd.seq:SEQF1003 is used to demonstrate the provides available for homd.seq. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.