The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.

genome microbial
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in HOMD Sequence Metainformation should match this regular expression:

Example Local Unique Identifier
SEQF1003   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from HOMD Sequence Metainformation should match this regular expression:

Example CURIE
2010 The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
Metaregistry HOMD Sequence Metainformation

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOMD.SEQ logo miriam homd.seq
N2T Name-to-Thing logo n2t homd.seq
Prefix Commons Prefix Commons logo prefixcommons homd.seq

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SEQF1003 is used to demonstrate the providers available for HOMD Sequence Metainformation. A guide for curating additional providers can be found here.

Name Metaprefix URI
HOMD Sequence Metainformation homd.seq
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF