The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.

genome microbial
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in HOMD Sequence Metainformation should match this regular expression:

Example Local Unique Identifier
SEQF1003   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from HOMD Sequence Metainformation should match this regular expression:

Example CURIE
2010 The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
Metaregistry HOMD Sequence Metainformation

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOMD.SEQ logo miriam homd.seq
N2T Name-to-Thing logo n2t homd.seq
Prefix Commons Prefix Commons logo prefixcommons homd.seq

Providers are various services that resolve CURIEs to URLs. The example CURIE homd.seq:SEQF1003 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
HOMD Sequence Metainformation homd.seq
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF