Registry HOMD Sequence Metainformation

The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.

Prefix
homd.seq
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in HOMD Sequence Metainformation should match this regular expression:
^SEQF\d+$

Example Local Unique Identifier
SEQF1003   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from HOMD Sequence Metainformation should match this regular expression:
^homd.seq:SEQF\d+$

Example CURIE
homd.seq:SEQF1003
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for homd.seq.

Registry Name Metaprefix External Prefix
Identifiers.org miriam homd.seq
Name-to-Thing n2t homd.seq
Prefix Commons prefixcommons HOMD.SEQ
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE homd.seq:SEQF1003 is used to demonstrate the provides available for homd.seq. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
HOMD Sequence Metainformation homd.seq http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=SEQF1003
Bioregistry bioregistry https://bioregistry.io/homd.seq:SEQF1003
Identifiers.org miriam https://identifiers.org/homd.seq:SEQF1003
Name-to-Thing n2t https://n2t.net/homd.seq:SEQF1003