The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.
- Prefix
gxa.gene- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in GXA Gene should match this regular expression:
^\w+$ - Example Local Unique Identifier
- AT4G01080 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from GXA Gene should match this regular expression:
^gxa\.gene:\w+$ - Example CURIE
- gxa.gene:AT4G01080
Contacts
- Contact
- Missing Contact
- Identifier Space Owner
- European Bioinformatics Institute
Metaregistry GXA Gene
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GXA.GENE
|
|
Identifiers.org
|
miriam |
gxa.gene
|
|
N2T
|
n2t |
gxa.gene
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier AT4G01080 is used to demonstrate the providers
available for GXA Gene. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| GXA Gene | gxa.gene |
https://www.ebi.ac.uk/gxa/genes/AT4G01080 |
| Bioregistry | bioregistry |
https://bioregistry.io/gxa.gene:AT4G01080 |
| Identifiers.org | miriam |
https://identifiers.org/gxa.gene:AT4G01080 |
| Name-to-Thing | n2t |
https://n2t.net/gxa.gene:AT4G01080 |