The Genome Taxonomy Database (GTDB) is an initiative to establish a standardized microbial taxonomy based on genome phylogeny.

Prefix
gtdb
License
CC-BY-SA-4.0
Links
Homepage Request Discussion
Contact
Donovan Parks   0000-0001-6662-9010   donovan-h-parks
Pattern for Local Unique Identifiers

Local identifiers in Genome Taxonomy Database should match this regular expression:
^[cdfgops]__\w+\S+$

Example Local Unique Identifier
g__Prochlorococcus_A   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genome Taxonomy Database should match this regular expression:
^gtdb:[cdfgops]__\w+\S+$

Example CURIE
gtdb:g__Prochlorococcus_A
Publications
Contributors
Reviewer
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Synapse.org external links
Metaregistry Genome Taxonomy Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Pathguide Pathguide logo pathguide 190
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier g__Prochlorococcus_A is used to demonstrate the providers available for Genome Taxonomy Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name Metaprefix URI
Genome Taxonomy Database gtdb https://gtdb.ecogenomic.org/tree?r=g__Prochlorococcus_A
Bioregistry bioregistry https://bioregistry.io/gtdb:g__Prochlorococcus_A