The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.

genome genomics metabolomics metagenomics ontology and terminology phylogenetics
TBK Reddy   0000-0002-0871-5567   TBKReddy
Pattern for Local Unique Identifiers

Local identifiers in Genomes Online Database should match this regular expression:

Example Local Unique Identifier
Gs0000008   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genomes Online Database should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with gold:

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for gold. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry Genomes Online Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5q1p14
Integbio Integbio logo integbio nbdc00483 logo miriam gold
Prefix Commons Prefix Commons logo prefixcommons gold
re3data Registry of Research Data Repositories logo re3data r3d100010808

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Gs0000008 is used to demonstrate the providers available for Genomes Online Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Genomes Online Database gold
Bioregistry bioregistry miriam
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF