GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013

Prefix
geno
Preferred Prefix
GENO
Keywords
disease phenotype genomics genotype obo ontology
Version
2023-10-08
License
CC-BY-4.0
Links
Homepage Repository OBO OWL OBO JSON
Contact
Matthew Brush   0000-0002-1048-5019   mbrush
Pattern for Local Unique Identifiers

Local identifiers in Genotype Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000632   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genotype Ontology should match this regular expression:
^GENO:\d{7}$

Example CURIE
GENO:0000632
Metaregistry Genotype Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl GENO
BioContext biocontext GENO
BioPortal BioPortal Prefixes logo bioportal GENO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.kpbna7
OBO Foundry OBO Foundry logo obofoundry geno
OLS Ontology Lookup Service logo ols geno
OntoBee OntoBee logo ontobee GENO
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/GENO_$1

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE GENO:0000632 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Genotype Ontology geno http://purl.obolibrary.org/obo/GENO_0000632
Genotype Ontology (RDF) rdf http://purl.obolibrary.org/obo/GENO_0000632
Bioregistry bioregistry https://bioregistry.io/geno:0000632
OBO Foundry obofoundry http://purl.obolibrary.org/obo/GENO_0000632
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_0000632
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/GENO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GENO_0000632