GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013
- Prefix
geno- Preferred Prefix
GENO- Keywords
- disease phenotype genomics genotype obo ontology
- Version
- 2023-10-08
- License
- CC-BY-4.0
- Links
- Homepage Repository OBO OWL OBO JSON
- Contact
- Matthew Brush 0000-0002-1048-5019 mbrush
- Pattern for Local Unique Identifiers
-
Local identifiers in Genotype Ontology should match this regular expression:
^\d{7}$ - Example Local Unique Identifier
- 0000632 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Genotype Ontology should match this regular expression:
^GENO:\d{7}$ - Example CURIE
- GENO:0000632
Metaregistry Genotype Ontology
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
GENO
|
|
| BioContext | biocontext |
GENO
|
|
BioPortal
|
bioportal |
GENO
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.kpbna7
|
|
OBO Foundry
|
obofoundry |
geno
|
|
OLS
|
ols |
geno
|
|
OntoBee
|
ontobee |
GENO
|
RDF Information
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/GENO_$1
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 0000632 is used to demonstrate the providers
available for Genotype Ontology. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.