Registry Genomics Cohorts Knowledge Ontology

An ontology to represent genomics cohort attributes.

Prefix
gecko
Preferred Prefix
GECKO
Version
2021-01-18
Links
Homepage Repository OWL
Contact
Rebecca Jackson   0000-0003-4871-5569   beckyjackson
Pattern for Local Unique Identifiers

Local identifiers in Genomics Cohorts Knowledge Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000044   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Genomics Cohorts Knowledge Ontology should match this regular expression:
^GECKO:\d{7}$

Example CURIE
GECKO:0000044
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for gecko.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal GECKO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3da56b
OBO Foundry OBO Foundry logo obofoundry GECKO
Ontology Lookup Service Ontology Lookup Service logo ols gecko
OntoBee ontobee GECKO
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE gecko:0000044 is used to demonstrate the provides available for gecko. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Bioregistry bioregistry https://bioregistry.io/gecko:0000044
OBO Foundry obofoundry http://purl.obolibrary.org/obo/GECKO_0000044
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_0000044
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/GECKO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GECKO_0000044