GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.
gabi
Local identifiers in GABI should match this
regular expression:
^\w+$
Compact URIs (CURIEs) constructed from GABI should match
this regular expression:
^gabi:\w+$
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GABI
|
|
Identifiers.org
|
miriam |
gabi
|
|
N2T
|
n2t |
gabi
|
|
|
NCBI
|
ncbi |
GABI
|
|
|
Prefix Commons
|
prefixcommons |
gabi
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 2679240 is used to demonstrate the providers
available for GABI. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| GABI | gabi |
http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=2679240&Mode=ShowBioObject |
| Bioregistry | bioregistry |
https://bioregistry.io/gabi:2679240 |
| Identifiers.org | miriam |
https://identifiers.org/gabi:2679240 |
| Name-to-Thing | n2t |
https://n2t.net/gabi:2679240 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/gabi:2679240 |