FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.

Jason E. Stajich   0000-0002-7591-0020
Pattern for Local Unique Identifiers

Local identifiers in FungiDB should match this regular expression:

Example Local Unique Identifier
CNBG_0001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from FungiDB should match this regular expression:

Example CURIE
Metaregistry FungiDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext FUNGIDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.xf30yc logo miriam fungidb
N2T Name-to-Thing logo n2t fungidb
re3data Registry of Research Data Repositories logo re3data r3d100011906

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CNBG_0001 is used to demonstrate the providers available for FungiDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
FungiDB fungidb
Bioregistry bioregistry miriam
Name-to-Thing n2t