Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.

Prefix
funcbase.yeast
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in FuncBase Yeast should match this regular expression:
^\d+$

Example Local Unique Identifier
2701   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from FuncBase Yeast should match this regular expression:
^funcbase.yeast:\d+$

Example CURIE
funcbase.yeast:2701
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for funcbase.yeast.

Registry Name Metaprefix External Prefix
Identifiers.org miriam funcbase.yeast
Name-to-Thing n2t funcbase.yeast
Prefix Commons prefixcommons FUNCBASE.YEAST
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE funcbase.yeast:2701 is used to demonstrate the provides available for funcbase.yeast. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
FuncBase Yeast funcbase.yeast http://func.mshri.on.ca/yeast/genes/list_functional_scores/2701
Bioregistry bioregistry https://bioregistry.io/funcbase.yeast:2701
Identifiers.org miriam https://identifiers.org/funcbase.yeast:2701
Name-to-Thing n2t https://n2t.net/funcbase.yeast:2701