Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.

Prefix
funcbase.human
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in FuncBase Human should match this regular expression:
^\d+$

Example Local Unique Identifier
119514   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from FuncBase Human should match this regular expression:
^funcbase\.human:\d+$

Example CURIE
funcbase.human:119514
Metaregistry FuncBase Human

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext FUNCBASE.HUMAN
Identifiers.org Identifiers.org logo miriam funcbase.human
N2T Name-to-Thing logo n2t funcbase.human
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 119514 is used to demonstrate the providers available for FuncBase Human. A guide for curating additional providers can be found here.

Name Metaprefix URI
FuncBase Human funcbase.human http://func.mshri.on.ca/human/genes/list_functional_scores/119514
Bioregistry bioregistry https://bioregistry.io/funcbase.human:119514
Identifiers.org miriam https://identifiers.org/funcbase.human:119514
Name-to-Thing n2t https://n2t.net/funcbase.human:119514