Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.

Prefix
funcbase.fly
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in FuncBase Fly should match this regular expression:
^\d+$

Example Local Unique Identifier
10194   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from FuncBase Fly should match this regular expression:
^funcbase\.fly:\d+$

Example CURIE
funcbase.fly:10194
Metaregistry FuncBase Fly

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext FUNCBASE.FLY
Identifiers.org Identifiers.org logo miriam funcbase.fly
N2T Name-to-Thing logo n2t funcbase.fly
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE funcbase.fly:10194 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
FuncBase Fly funcbase.fly http://func.mshri.on.ca/fly/genes/list_functional_scores/10194
Bioregistry bioregistry https://bioregistry.io/funcbase.fly:10194
Identifiers.org miriam https://identifiers.org/funcbase.fly:10194
Name-to-Thing n2t https://n2t.net/funcbase.fly:10194